Over the past few weeks, I've been working on a number of things. I had to alter some of the CSVs I created, because my original files were counting symptoms as mentions of a condition. Analyzing symptoms would be interesting …
Tag Archives: rebecca
Week 18 & 19 – Rebecca
This past week, I created more CSVs for mentions of CAD, hypertension, hyperlipidemia, and obesity. These CSVs are based on whether or not each condition is mentioned at all, so there are only two possible options (mentioned or not mentioned). …
CREU Week 13 – Rebecca
This week, we put together a presentation of our work for our school's metadata research group. They gave a lot of really interesting feedback, which was much appreciated! Some of their ideas were outside of what we'll be able to …
CREU Weeks 11 & 12 – Rebecca
After having Thanksgiving break, we decided to lay out our game plan for the rest of the semester. I will continue looking into discrepancies between medical records. Specifically, I'm looking into patients' smoking statuses. It's common for one record to …
CREU Weeks 9 & 10 – Rebecca
Our server is finally working! I've been learning how to use the command line and how to SSH into the server. Having remote access will be especially useful for me, since I live off campus. Yay!
We also did some …
Rebecca’s CREU Update! 10/27/15
This week, we worked on finishing up our person and patient classes. I also created separate objects for each tag category - for example, family history and medication. At first we were reading in these tags as strings. Now we …
CREU Update! 10/16/15
Today, Stephanie and I worked on creating Person and Patient objects in Python (Katie is away at a conference, go Katie!). I've never used Python for object-oriented programming before, so I had to learn the basics of class definitions, how …
CREU Update! 10/9/15
After spending some time writing a program to read in our patient files, we've begun working with regular expressions in Python. First, we worked through many exercises to reacquaint ourselves with regular expressions in general. Then, we worked on implementing …
CREU Update! 9/29/15
Now that we've all gotten our CITI certifications sorted, we'll be programming soon! We've decided to use Python for this project. I'm excited for this, because I haven't used Python since my first semester here at Simmons. We've also looked …
CREU – Update 0!
The CREU Clinical Narratives project is officially underway! We're going to be spending our year studying patterns in clinical narratives using a natural language processing (NLP) approach.
This week, we met for the first time since last semester and began …